Index

E

edger_pseudobulk() (in module singlecell_cookbook.tools.analysis)

G

gene2go (singlecell_cookbook.tools.analysis.ParsedOntology attribute) go_enrichment() (in module singlecell_cookbook.tools.analysis)

goterms (singlecell_cookbook.tools.analysis.ParsedOntology attribute) graph (singlecell_cookbook.tools.analysis.ParsedOntology attribute)

M

module singlecell_cookbook.tools.analysis singlecell_cookbook.tools.preprocess

N

nodes_list (singlecell_cookbook.tools.analysis.ParsedOntology attribute)

P

parse_obo() (in module singlecell_cookbook.tools.analysis)

ParsedOntology (class in singlecell_cookbook.tools.analysis) pool_neighbors() (in module singlecell_cookbook.tools.preprocess)

S

singlecell_cookbook.tools.analysis module singlecell_cookbook.tools.preprocess module

subset_obs() (in module singlecell_cookbook.tools.preprocess) subset_var() (in module singlecell_cookbook.tools.preprocess)